I have (most of) the shop manual in .pdf format. PM me with an email address and I'll email it to you. It's about 4 megs worth of 13 separate files, including a complete section on the electrics, including all testing and troubleshooting.
*EDIT* Just re-read your post and it looks like you have a manual, just not the correct one - mine may be the same one you already have. Hmm....
Also, there's a Yamaha Triples forum out there, same as this SOHC4 Honda forum. Seek it out, there will be MUCH more detailed help available. I was an active member there a few years back, when I had a '77 XS750.
Kirk