can't you put it back to stock? From what you're describing, your potential for fuel delivery is diminished by having fewer places to feed the carbs than it's stock trim. Retrace your steps, fuel either can't get into #3, or out... and there are only a very small number of reasons that could happen, especially at higher revs.. the main jets rarely clog, and you have just cleaned them, right? So it stands to reason it's just not able to replenish its fuel supply as fast as it can use it. So, delivery starts at the tank, through the "T"s and then through the needle/seat, into the bowl.
get in there!