Hi, output shaft definitely has a tab, cases apart for all the tranny bearings for sure. The primary shaft is got to on the clutch side, remove the cover and the primary gear, there is a circlip that when removed u can pull on the shaft and it comes out along with that bearing. I think the other bearing is accessed from an internal circlip, which could be accessed through the bottom by removing the sump and using 90 degree pliers..
As to the possibilty of gear noise, I tried to research a little on the matter, the reversing sound could be because of the type of cut used on the gears, in some bikes with seperate gearboxes, people using a heavier oil to make them less whiny. Gonna change oil In a couple of weeks so will report back on that.
In regards to the drive chain, I imagine it could cause a whine but I'm sure that's not the case for me as mine makes the noise standing still when the engine is loaded!
Ashlet