Thanks for the responses and sorry for the late reply.
There are too many of these threads where the OP maybe found the answer but didn't post it. I found my answer so maybe this will help anyone with this issue who reads this.
Although I rebuilt my carbs completely when I built the bike and only had a couple hundred miles on it since, I pulled the carbs off and went through them because I didn't know what else to do. To my suprise there was a fair amount of gummy deposits on the throats of carbs. I cleaned them well with carb cleaner but my issues described above were likely due to the following:
Crazy reving between gear shifts:Carb slides has some gummy deposits that were really sticky. One or more slides would hang up. When I shut the throttle quickly between shifts, I would use a good amount of force. Since 3 of the 4 carbs slides and on levers with springs, I was able to shut the throttle all the way but one or more slides would not close quickly enough or at all because they are sping loaded.
Bad 1st gear starts/high idle:I went through my build pictures and couldn't find one with the slow jets removed. I was beginning to think I did not remove or clean them. I did so and saw that I could not see through them. I soaked them in carb cleaner and blew them out with an air duster (smallest needle I could find was still too big). The bike was indead having issues transitioning to the idle circuit because it was clogged. I was likely trying to idle using the main jet and needle position which explains the inconsistent idle.
Also, I completely removed all idle mixture screws and found the there was an o-ring in one that had torn, curled up, and was blocking the hole. This may have contributed some.
I took the bike to work today and it ran like a TOP! Idled rock stead, revs dropped on command, and the initial throttle response was light, sooth, and progressive. Problems solved.