A good recommendation, if you have not done it yet, would be to do the 3K tune up that is in the downloadable manual. It would be good to know what every part needing to be checked is right (i.e. timing chain adjustment, valve adjustment, points/plate adjustment and condition...).
Since you said that the filters and pipes are stock, jetting at what it is supposed to be per the carb model number should be a good place to start.
You can checked for air leaks on the front a rear boots of the carbs too.