I understand it now. The hub and retainer are machined with the holes, and then some piece of material is inserted to keep the retainer from loosening.
The question is: is it easy to drill only the dimple and not damage the hub and retainer?
Not quite. The dimples in the thread area are put there with a punch. The threads of each piece are distorted and hence they lock together. There is no extra piece inserted.
Running a drill bit into the stake hole will clear out the distorted threads and allow the retainer to rotate. You don't "damage" the hub or retainer but you certainly modify them. Drilling out the stake is the designed in way of releasing the lock.
The stakes are put in after the retainer is turned to its full tight position. There is no way of knowing in advance where the retainer will end up in rotation, so the stakes are punched in after it is tight. Probably by machine, true, but AFTER the retainer is tight.
You'll want to punch in some stakes as well, upon reassembly. I just put in 2 not 4. Should be enough. Use a hammer and a center punch.