The 400 four is pretty in vogue right now, and there are quite a few NOS and modern parts available online for this little bike. David Silver and CMSNL are two good options for OEM. Bike bandit as well. Rick Denoon makes some trick parts for these bikes as well as TTR-400 out of South Africa.
I've heard really good things about the big bore kits on ebay...they are for sure the cheapest. If you wanna pay, I think Yoshimura still makes a kit as well, as well as a tried and true performance exhaust.
At 50k, you should strongly consider a bottom-end tear down as well. Inspect the cam chain tensioner as well as the threads on the adjustment screw. Bearings should be replaced with new as a matter of course. If that cam chain tensioner is shot, look into one from TTR400, and never worry about it again.
If you want a step-by-step rebuild story to follow, RickB's 400 rebuild on this site is bar none.