kevin camron says in his book that he's seen, bikes with 3-angle, no angle and what-have-you valve seats, all in the winners cycle, so until i see (one day....) flow testing of a 500/550 head with 3 angle being better, i'd say just do normal maintenance/ basic port cleaning.
Theres no evidence that polished ports flow better either, even the opposite, i like to leave them rather coarse. no doubt polished ports look cool in pictures, if the air particles like it is another matter
At this point you'll ave to tell us your info sources
why change studs? where did you read that? steel is not a material that has a fatigue limit...
would wait with the clutch until you see that its slips under power, the stock one is pretty good, all i often do is add washers under the springs to preload it more by 1-2mm
and would go with mrieck's mls head gasket....