You have told us what model bike you have?
Unless you have a PD carb model, you can expect the engine to run pretty rich at idle and will be moreso with choke operation. These conditions lend themselves to carbon build up. The removal of carbon occurs when the engine is made to produce full power, which gets the carbon hot enough to burn off or dislodge and exit the exhaust. Again this depends on how the fuel mixtures were set. But, the way it was driven daily also matters. These engines were not meant to be babied and remain in the low RPM regime. Imo, you aren't doing them any favors by keeping them below 5000 RPM, or reducing the RPM on the freeway with gearing changes.
Anyway, while the carbs determine fuel mixtures, they are dumb and non-adaptive. The factory settings and adjustments work rather well as long as the engine is left in stock form as well as the induction and exhaust characteristics.
If you have PD carbs, 5 turns outs is further enrichment if the idle mix and more chance of carbon during idle conditions.
If you have earlier style carbs, 5 turns out is a leaner setting than stock.
Are the cylinder carbon deposit patterns different among cylinders? Do the deposit pattern differences coincide with carb screw settings?
I would certainly clean carbon build up while it is disassembled. (I'm not all all sure why you needed to take it apart in first place.) However, if the surface is just dark and less than a 1/64 or 1/32 of an inch, I'd probably let it go for a street bike.
However, all that carbon deposits do is raise the compression ratio, which actually helps the engine to make more power. Clearly, when this gets extreme, pinging, detonation, and/or the need for higher octane fuel occurs. A compression test that shows too high a compression value (using a proper tester), means a de-coking, de-carbon effort is required.
The cylinder simply does not run clean. They can't, especially with an air cooled engine, as the cooling system is excessive 80- 90% of the time. And this leads to inefficient mixture burn in the cylinders.
Do scrape off any deposits that are significant, particularly burrs, or edges, and try to keep get all the pistons/chambers equal in volume. There are decarbonizing techniques that simply mist water into the carb intake while the engine is producing power (high heat). This can do in a few seconds what hours of scraping can do.
Just how thick is the carbon you are seeing, that warrants a "so much" label?
Cheers,