I pulled out the Ammeter to check continuity
Er, ammeters measure current. Ohmmeters measure resistance or continuity quality.
For troubleshooting the ignition:
VoltMeter probes black and Red right?
Use voltage scale. Turn on ignition; kill switch in the RUN position.
Black lead on the breaker plate.
Verify Blk/White to the coils have 12V
Reconnect Blk/White to the coils.
Verify Yellow wire from coil (wire to points disconnected) has 12V. If missing voltage replace coil.
Verify Blue wire from coil (wire to points disconnected) has 12V. If missing voltage replace coil.
Stick thin balsa or thin card board between both point contacts, both points
Reconnect yellow and blue wires at points.
Verify 12 v at stud terminal of both points.
If 12 v missing, disconnect condenser and wire from points stud.
Verify 12 v at disconnected wire end Yellow and Blue. If either missing voltage find break or ground in wire between coil and points.
Reconnect only the wires to the points stud.
Verify 12 v at stud terminal of both points. If either missing voltage replace that points set.
Reconnect condenser to the points stud.
Verify 12 v at stud terminal of both points. If either missing voltage replace the condenser.
Remove card board between points.
Verify 12 v at stud terminal of both points when open. And zero V at stud terminal of both points when contacts are closed.
Run bike.
The new signals are three wire, so the ground wires of the new signals were not used and taped off. They are grounded through the headlight shell.
Only if they still have a connection to the green wires in the elect harness. The the Headlight buckeyt is connected to the upper fork covers that are rubber isolated from the forks and frame.
Those turn signal grounds should connect to the green wires in the harness bundle in some way.
Is there a switch in the clutch that only allows the bike to start with the clutch disengaged?
The electric start should work with either clutch disengaged, or the trans in neutral. Neither of these interlocks effect ignition circuits. Kick start whenever.
Cheers,