I looks like my build. I cut the head to true it up and get back some compression and opened up the quench band a little. Mine was .008 out of the hole if I remember correctly. I didn't shim the base and didn't get aftermarket springs. I did however float the valves and ding an exhaust, so now I'll be buying springs and retainers and since i'm going bigger on the cam I'll revisit the base gasket issue too.
I pocket ported the head and it really rips. There is a big thread with lots of specifics hondaman has done a couple of these. They don't all have the piston height issue, maybe the newer kits.