The stock ones are M6x1.0 40mm long with about 12mm of equal threads on both ends. You could try doing heli-coil and getting new OEM studs. I just received four (needed one but ordered extras just in case) from a vendor online. The part number is 90044-323-300, under $2 a piece.
You could use hex or Allen head bolts, but it isn't recommended. With studs, the threads in the head aren't being tampered with each time the exhaust is pulled. Whereas with bolts, every time you drop the exhaust you are wearing the threads and potentially doing more damage like that which has already been done on your bike from the PO.
One alternative I considered was ordering M6x1 316 SS studs, 40mm in length from McMaster and just using brass or bronze flange head nuts, but they are costy..
Hope that helps,
Chris C.