Hi KC, I had the same issue, left was slightly off, right side fit terrible. I think I got the last 2 upper HM341's available in the US. Both bottoms, I had to get via Ebay. I originally thought that the trouble was maybe from mixing 3 different runs of pipe, but that upper right was really off. It would bolt up just fine, till you look at the interconnect in the back, just like your picture. That #3 pipe isn't bent enough/and or the tube for the bolt isn't welded in correctly. Maybe by the last run of these pipes the jigs were getting worn out?
My solution was......... GASP ----- dremel some off the tube that the foot peg bolt goes through. I tried to bend it like Johnie, but chickened out after a few unsuccessful tries. These darn pipes are worth their weight in gold now, and you have to try to bend them or grind on em??
Not fun. I was able to grind off just enough, that the rubber is straight enough to be passable. I try not look at it though, because it bugs me that its not perfect. I'm sure that miss-bent pipes, and bad chrome is what finally pulled the plug on our mufflers. Mine would have been sent back immediately if there was an option of getting properly made ones.