..ok, I see what your are asking. Before I did mine there was a discussion about keeping the engine mounts inline and what not, and its simply not a problem. After you cut the backbone and the down tubes, the frame (and engine mounts) will still maintain there place. The area around the swingarm keeps the frame rails in place. I took some measurments of the engine mounts before and after the mod, and everything held to its original position. You do need to use some common sense on making sure everything is aligned and equal on both sides as you put the sleeves in place. If I can remember I'll get some more pics this weekend of the frame, and some close ups of the sleeves.
...I havn't used the frame yet...when I find a motor thats where it will go. So as far as forks goes, I don't know cuz I havn't mocked it up. I'd guess only a couple inches over stock as I 4" to the downtubes, but did not change the rake...