This is the internet - of course we are never going to "get along". The civility here is actually quite amazing when compared to most forums.
Years (decades) ago I put pods (plus exhaust and many engine mods, so carb tuning was required regardless) on the 400F I still have. i was younger and stupider. I had lots of time to work on the bike. Multiple Keihin jet sizes were still available from Honda and there were several dealers in the area. I had plenty of nearby police-free deserted straight flat roads to do the countless plug shops needed.
It took much more time than was reasonable to get the carbs tuned.
Now I have no complaints, no caveats or "buts". The bike works as well or better than than any stock airbox fitted one I have ridden - limiting that to 70s "SJM" models of course. I have no problems with rain - no noticeable effect in a torrential downpour, and I don't understand how that would cause a problem: the filters may get wet but the water just sucks in and that's that.
I might have the OEM airbox etc somewhere in a box but I doubt if I will never use it.
My opinion is that - on at least the 400F - it is possible to tune for pods.
I do not recommend it to anyone. The stock airbox works well and the process of tuning is laborious and challenging. OEM jets are no longer readily available. Plug chops invite speeding or stunting (in Ontario at least) tickets. Unless you own an EGA dyno, the hours required mean using one will bankrupt you. You will re/re the carbs a hundred times or so, balance them dozens of times. The needed reprofiling of the needles is a trial and error process where removing too much metal is always a risk... and that destroys the needles and all the profiling work so far. New needles are, of course, NLA.
Particularly for an otherwise stock bike, don't even think about it. Carb work is a PITA: if it works, don't fix it.
Of course you can just put the pods on and install a larger main jet and a smaller pilot jet. That gets you close, but you will definitely have stumbles and flat spots.
The various "pods can't work" theories of carb throat flow, pressure, and turbulence are interesting: remember that, theoretically, a bumblebee can not fly. Keihin and Honda did a decent job fitting a working filter and induction system into the available space given by the designers. Keihin and Honda were not omnipotent and the fuel system is, like everything else, a compromise. Just because it's what the factory chose does not make it perfect or even ideal.
Pods have advantages in size and appearance, and lots of disadvantages as well - using them is just another compromise.
If you don't like them, don't use them. Simple, huh?