With ignition off there is no way that any consuming devices are connected. You could have fried the coils, but they are not connected with ignition off.
Furthermore, you are not measuring correctly. Voltage is measured in parallel, current is measured in series. If you have only connected the negative lead, if you want to check battery voltage you have to measure between the battery terminals, with both leads connected. Your measurement is completely normal. If the bike resistance should have been 0 ohms, voltage should be battery - voltage dropped. 0 ohm drops 0 volts, so you should have read 12 V. As there are a lot of wires on the wire loom, and also the rectifiers and regulator, even with the high impedance of the voltimeter that measurement could happen.
If you want to check if there is something sinking current, make sure that the ignition is off, connect only negative battery lead and connect the current meter between battery and positive lead. Reading should be 0 amps. If you connect the ignition, headlight and coils will be connected and reading should jump to several amps, so make sure that your scale in the current meter is high enough.
Raul