Looking real good
Subtle changes have made sure there's no question it's still a CB400F.
Regarding the Bogging, I'm having the same issue on my recently bought CB400F.
I'm suspecting electrics are my problem (odd plugs and caps + non OEM points) but it's also got a shorter than original new muffler.
Waiting for the rain to stop so I can test it out with it's new plugs, caps and swapped points.
Idles a lot smoother with these.
If this doesn't fix it, I'll be looking at putting the original but grubby exhaust on to test for fuel mix problems.
Opening carbs will be last on my list
Keep us posted on progress of yours