SUCCESS!!! I finally got the engine back together and running and just got done taking it for a long test ride. The vibration I was feeling at 5k rpm is gone and the trans shifts beautifully now thanks for the most part from installing all new bearings in the trans because I'm convinced that was the culprit to the 5k rpm vibration. While I had it apart replacing all the trans bearings I lapped the gears per Hondaman, replaced both cam and primary chain not that either was all that bad but I don't intend on taking this engine apart for a while so I replaced them while I had it apart. Also new piston rings and had new valve guides installed, seats cut and all new valves and some mild porting, I basically have a bike that feels completely different now. The engine runs much smoother, pulls stronger, shifts smoother and best of all that pesky 5k rpm vibration is gone.