After a few minutes of idle pipe 2,3 are super hot while 1,4 are warm to the tough. Is this normal?
No
The guy I purchased it from said adjusting the carps to make 2,3 richer would cool them down. Does this make since?
No
1 - Tune carbs AFTER the entire 3K tuneup checklist is completed.
2 - Carb internal settings and parts are selected to match the intake and exhaust parameters. IF those aren't stock, you have a rejetting adjustment job for the carbs. Your bike is therefore far from finished. And, the hard part is to get the carbs to run right for your applied changes.
3 - I saw no mention of vacuum sync. Which can make a big difference.
4 - PO rebuilding carbs means nothing (and possibly worse than nothing with his comment to alter #2-3 carbs), unless he was a professional carb rebuilder and used the correct Keihin parts appropriate for your existing intake and exhaust set up.
5 - Find out what your carbs have inside them for parts and adjustments. They would originally have a set up stamp on them of 022a. But, meddlers can change internals without bothering with the stamping.