My 77 750K came with a Windjammer which I removed and installed blinkers and a headlight sourced off eBay from a CB650...so I've been through this process.
One thing you can do is double check the wiring from the Vetter harness remains, as there might have been slight ground mods made to accomodate the original installation of the Windjammer on your bike that might now be messing you up.
See craigvetter.com for Windjammer wiring schematics and info to reverse-engineer your issue (maybe).
My blinkers came with two wires each, which as I recall were both Pos, one for each of the two functions (turn filament and running light filament)
On my bike, the light signal pod on the handlebars grounds to the handlebars themselves...which I found out when installing new bars and wrapping electrical tape around the bars to give the pod a snug fit. D'oh.
However, it seems to me that some CB's...the ones in which the turn signal stems attach to the sides of the headlite bucket...the nut inside the headlight bucket comes with a lead attached via a washer...I'm assuming that on some models, those leads are the Grounds for each turn signal/running light assembly.
At any rate, it sounds like you have a Ground problem...in my case, I took the bike to the shop I use after jury-rigging a bunch of ugly solutions that just drained my battery after every 2 hours of riding. It took the mechanic under 2 hours to completely tidy up my electrical system, including removing a bunch of unecessary wires and connectors related to the original Windjammer installation.
My guess is your problem is related to tidying up the mess of wires used for the Windjammer.
Hope this helps.