OK, quick update.
I took the cylinders out to Willy at WASP Performance (like the insect, not the kind of person

) to have them properly dial bore gauged. He was able to eyeball them and say that the wear pattern indicated they were worn asymmetrically, and that if it was up to him, he would overbore and get new pistons. That pretty much clinched it for me.
Now I need to find the right pistons to go to. He was aware of the F2/F3 valve guides but not that the pistons were different; he also warned me away from the crappy Chinese piston kits on eBay these days. (Especially funny coming from an older, greying Chinese man!) He seemed surprised that there was nothing smaller than the 836 kit available, but given that the F2/F3 engines have weird requirements, he wasn't completely shocked.
I contacted CycleX and they are not presently carrying the F2/F3 pistons, but if they did, they'd have the same 836 kit.
I noticed also that Z1 Enterprises no longer carries the Wiseco 836 kit.
That pretty much leaves me with the Dynoman 836 kit, the more expensive Scheuerlein-Motorentechnik ones, or attempting to source NOS 0.25/0.50 pistons. I'm quite sure Honda has deleted those part #s at this point.
Anyone know of any other piston kit options before I just dump the money into the Dynoman 836 kit and be done with it?