Yes it is very true that due to the geometry of the parts involved the brake becomes tighter as the wheel moves up.
I have never experienced this and would seem to be a dangerous condition if the OEM design exhibited this sort of behavior. Something is wrong for this condition to exist, at least to the extent described by Jeremy.
I do think I'm right on this, though open for discussion. The first time I noticed it was back in the mid-70s. Like the OP, I like to set up the rear brake tightly. I was traveling at high speed on a smooth road. I went through a dip that compressed the rear suspension to bottoming. At the same time I felt the bike slow down for just a moment. Then all was normal again.
It goes with the same phenomena that the chain will tighten and loosen as the wheel goes up and down. I think we are all in agreement n that. There is nothing wrong, its just a function of the compromise in geometry. IF you think of it, the pedal pivot is fixed on the frame and can't move. The wheel travels up through its arc and increases or decreases its distance from the brake pivot, just like it does re the swingarm pivot. This resutls in a pull or release on the brake arm on the brake plate.
So most of us just unconsciously set the brake at a compromise that minimizes this feeling. The test is to remove the shocks and lift the wheel through its travel and observe. Though I have not done this, I am confident from my observations of what I would see.
(I see that MadMntn suggests the same thing, but he is looking for something wrong. I submit that with everything right, you will see what I'm getting at, the stationary brake pivot will pull and release on the brake arm on the brake plate. If you were also pressing down on the pedal while the wheel is going up, you will see the brake tighten up.)
This is at least partial explanation for rear wheel hop when applying the brake hard on a bumpy road. The brake alternately locks and releases.
When I was roadracing I had to do the same thing. If it was a smooth track, you could tighten up the brake pedal lash. If it was bumpy, you had to allow more lash for the deeper wheel travel. When heeled over in a bumpy turn you can feel the wheel going up and down telegraphed through the brake linkage.
As an aside, rear disc brakes don't have this feeling as they are hydraulic and don't have to deal with compromises in geometry.