I would not run an automotive electrical system without one. It will also not interfere with diagnosis of proper charging, that is an incorrect assumption on your part.
I did not mean to imply that I would run the system with no fuses, I absolutely understand that they are needed. I also understand that it does not affect the functionality of the system. What I meant was I didn't test my ignition system with my regulator/rectifier wired up because I did not have a fuse to protect it.
So, given the system I showed earlier, what needs protected the most? I would say the battery and regulator/rectifier?
Now, what I struggle with is where to place the fuse to protect that component, and how to determine the correct amperage fuse. In order to protect a specific component (lets say the battery), do I place a fuse on the + lead of the battery?
What about the regulator/rectifier? Do I place it at the + power lead coming into the unit?
This is the type help im looking for. Thanks!