If you use studs, no AntiSieze in the portion threaded into the block. You want them to stay, and to stay forever (figuratively). AntiSieze on the nutted section is a good idea.
You only need a stud slightly longer than the bolt you're currently using to allow the stud tip to extend beyond the nut. I used ARP studs for my 550/500 bikes, and ordered them in 32mm.