Yes good job with the steering stops, It's a good approach, I did the same thing myself. You've got good skills. I think a change of rake can be felt easily especially when the rider is familiar with and pushing the bike at speed. Trail is different. I might only suspect a lack of trail if the front is skittish in a straight line. These are street based bikes, there will be some weave under throttle off the corners, chatter sometimes if entering one too hot. My bike was destroyed because of a violent tank slapper that I couldn't get under control, the rear broke loose, rehooked and it was over in two seconds. Besides the fact I felt it needed less rake to help it turn, the thing never gave me any indication that there was too little trail. It was very civilized, trail was less then 90mm.
I don't believe you'll feel anything but a better turning motorcycle. At 3.68" you might be ok, less than that might not be!!
Good luck I hope it's much improved.