Always place the base gasket on the block, then drop the O-rings from your gasket kit onto those studs, then measure how much they stick up above the base gasket. We have recently seen lots of O-rings coming in kits that are too thin in cross-section, which soon causes leaks. The O-ring here is 2.4mm in thickness, and should stand up 0.1mm above the gasket, for best results. If yours is too thin, drop me a PM, as I have some thicker ones (2.62mm), too.
This same rule applies at the head gasket. Many head gaskets today are too thick, or, again, the O-rings in the kits are too thin. Honda's head gasket was 1.00 to 1.04mm thick, compressing to .94 to 1.00mm thick at 15.2 ft-lbs of torque. The typical Vesrah (slippery) head gaskets are 1.10mm thick, and hardly compress at all, even at 18 ft-lbs. This has led to many head gasket leaks, and was the reason I switched to these 2.62mm thick O-rings there, also to stop the leaks.
There are some head gaskets out there which start at 0.92mm and compress to 0.88-0.90mm when installed: these will work OK with the 2.4mm thick O-rings supplied in most kits. The ones from Dik come to mind, sbutcheck your head gasket to be sure.