Next thing you should do is post some pictures. Well framed, well lit, clear pictures. Of the engine, carbs, etc.
You seem to be a little fixated on this "cycling" of the engine. It seems to be running faster than you remember but rpms are around 1200 like normal. What makes you think that before the engine wasn't "cycling" slow and is not normal?
You didn't mention using choke at all when you start your bike, do you use it?
Kind of sounds like maybe they just popped the bowls off and sprayed some carb clean in there and unclogged your pilot jets.