It's been a long time since I've updated this thread so I figured I'd better get on it.
I haven't completely finished everything that I had planned for the bike unfortunately. I still need to get the Ignitech ignition installed (having trouble with the hardware) and tune my ignition advance curve. I also am running the same carb jets as before the rebuild. They could conceivably be replaced with smaller jets due to the stronger vacuum draw from the larger pistons and higher CR, in addition to the other more unconventional mods which should lower lean burn limits.
The ignition of the Constant Energy HEI type, driven by two GM 7-pin HEI modules firing 0.5 ohm Chevy Cavalier coils. Two-inch sparks are no big deal with this ignition. Unfortunately, however, without the Ignitech unit I don't have vacuum advance so my mileage is suffering. I changed to the cooler (and side-gapped) NGK D9EA plugs to stay in line with the higher CR.
With all of that in mind, the bike is running astonishingly well. On the trip from KC to Oakley and back (1032 miles round trip) in mostly 95°F weather, the 11:1 engine happily ran on 87 octane fuel with the factory timing curve and absolutely no audible detonation (and verified by reading the spark plugs). A few stretches at 80 mph fighting a strong headwind didn't bother the bike a bit.
Idle is beautiful, rivaling most fuel-injected inline four's (remember this is also without tuning/optimizing the carbs). Power is much greater throughout the entire rev range. Torque below 4000 rpm is astonishing, especially for a carb'd 650. I'll have to get some new clutch plates and probably stronger springs to cope with the added torque and especially the power above 7000 rpm where the clutch slips like mad.
I would definitely consider these engine experiments a success.
MPG is generally the same as it was before the rebuild (~50mpg) which is probably due to the unoptimized timing and fuel curves and much more spirited riding. When the clutch decides not to slip, 100 mph is absolutely effortless.
If anyone wants to try the port mods send me a PM and we can work something out.