Hi Leonardo.
I did get the same issue with the larger shaft thing for the cb400F Dyna S.
It's normal as per Larry from Dynatek (great guy and customer service, 2 days later and the larger shaft was at my house)
Contact him!!! (see below)
M
"The majority of 350/400 motors will use the rotor included in the DS1-1 kit.
However, a small number of these machines used a mechanical advance assembly
that has a slightly larger shaft size. In these cases, we include a note in
the kit advising the installer to contact us so the larger rotor can be
supplied at no charge.
Please forward your full name, address and telephone number and we will ship
you the correct rotor at no charge.
Thank you,
Larry Nelson
Technical Support
Dynatek
1-800-928-DYNA (3962)
http://www.dynaonline.com