yes test assemble and measure clearances, no matter what combination you end up using.
forgot to mention: i also use 1mm oversize valves with the 126-00 and wiseco 59mm and didn't have any issues.
you could consider clear-coat if you want to avoid oxidisation or staining. i myself left the blasted cylinders and head, and polished cover naked aluminium as i want a more "matured" look. no long-term experience yet but i've ridden it for about 1/2 year through rain, sun and everything and so far it didn't noticeably change appearance.