I have bought and used pipemax for tuning exhaust systems and it has been very promising to date. Replaced 2 single pipes on a twin with a 2-1 system off the pipemax dimensions and picked up 2 hp over 8-1100 range - I am not convinced about the secondary pipe diameter, but the lengths seem spot on. It is an excellent little program and more importantly it helps you match up all the components in the engine - cam lift, inlet lengths, port diameters etc. so they all work in harmony. For the price it is definitely worth a go. If you want to punt me the engine data I will run it for you and send you the results if you like - it is very quick and easy to do.
Peter