If you didn't mark them at disassembly, there is a way on the post-K2 bikes to figure out which way they go: the inside bearings on the post-K3 bikes have more bearing clearance over the cam than the outer ones, by several thousandths of an inch. Typically, the outer bearings (new) had 0.0024" or so clearance while the inner ones were twice that. As the cam wears in, and due to the downward flex in the middle of the camshaft at engine speeds over 6000 RPM, the inner bearings wear more.
You will have to use either some really thick Plastigage, or bore gages and micrometers to measure this clearance. If the engine has more than, say, 20k miles on it, this clearance can be over 0.008" (like mine, at 0.010"!), but this will not hurt anything but an all-out racing engine. It was part of this engine's design, to let the center wear in over time and the forward edges of these bearings to wear in a slight egg-shape. Not to worry.