it depends on where your 'bog' is....you need to 'fix' the air/fuel mixture at that throttle position.
speed is really irrelevant for mixture tuning. be more concerned with throttle position, and what jet, or combinations of jets are supplying the needed fuel in that moment.
answer this...at your '40mph' when you feel the bogging, what throttle position are you at? Are you in 5th gear and just barely turning the throttle, or in 1st gear and at WOT?
for starters, your stock #35 slow jet is too small. to show yourself this, install your pods, install a NEW set of NGK D8EA plugs, and let your bike idle under a fan, for 3-4 minutes. pull the plugs and post up a picture here of the insulator color. They should be just showing light tan, but i would bet they are pretty white.
If they are, i'd suggest starting with 40 pilots, and 1.5 turns out on the mixture screw, and retest.
BTW, how thick are your shims, and do they sit down in the pocket of the slide?
(2 shims @ 1mm each sets a different needle height than 2 shims at .5mm ea
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what 4:2 exhaust do you have and does it have baffles or is it open?