There was some machining involved in the end of the crank for the stator I think... I forget exactly the issue but in either the early iteration of the 650 top end or the later 650 hybrid Paulage did some reworking of a tapered end IF I recall correctly.
But, It would pay you to copy the thread to a Word document and print it and study everything in it...
Or, request a moderator (with a small donation) to pull the text from Paulage's thread on the hybrid build.
Then, you will need to copy the images into that document onto your computer in order to insert them in their proper place.
Yeah, it is some work...but, you need to study it long and hard or have deep pockets and a good machinist to do some work for you at several steps along the way. It is hard to say if you can still get everything, but dropping a rebuilt 650 motor in the chassis and doing without the kickstart (as the 650 didn't have one) is the way to go with less investment. Doing it right will save you major headaches. Trying to modify it drastically from Paulage's hybrid might get you into uncharted waters. Hopefully you can swim well, should you choose to do so.
There is an overbore kit to take the 650 motor to 674 that I think a few guys on the forum have done (or are doing) to drop the 650 motor into the bike with the electronic ignition from the 650. M-units are a nice way to adapt the bike with a solid solution and the remote fob for security makes it easier to keep it from being hot-wired and taken that way. Calj737 is very experienced with the M-unit and I believe he has documented the wiring when using it on a 550 build...the 650 changes would be very similar to stay with some of the stock ignition system components.