I don't remember if that's neutral or not. You can test it by spinning the clutch shaft and holding the output shaft still (or vise versa).
You should be able to feel when it goes into gear. Not sure of the clicking sound you're referring to. You should be able to go down to 1st gear and then sense that it can't go any more. Then go to neutral and up through the gears to 5th and then, again, feeling that you're at the top and the drum won't advance. It's really not rocket science. Just shift through the gears. If you can't, something isn't right. If the shift forks aren't aligned properly, you'll need to split the cases again. Before that happens, you might be able to see what's going on by removing the oil pan and having a gander.