Cal, Let me just say that you are the man for reaching out and providing all that wonderful information. I do appreciate it.
I learned about the JIS screws from FAQ when I first started doing research. I bought a bit set, but I have become a big fan of this guy:
Vessel Megadora 980 Impacta
http://www.amazon.com/Vessel-Megadora-Impacta-P2x100-Screwdriver/dp/B003BI8HHQ?ie=UTF8&psc=1&redirect=true&ref_=oh_aui_detailpage_o01_s00It's been really nice on all of those rusted old screws.
I was able to do some work on the bike the last few days and I wanted to run you guys through my organization system.
I am a huge fan of the double zip lock bag system. I first like to take a picture of whatever I am about to dissassemble and write down the part on a post it note or small piece of paper. I then like to check the procedure with the shop manual to account for sequencing and wether a specialty tool is needed. From that point, I put the nuts, washers, or screws in a sandwhich size zip lock bag with their appropriate label. After the washers, nuts, and screws come out, I will remove the item and place it in a large zip lock bag with its appropriate label. I then put the appropriate nut, washer, and screw ziplock in the larger ziplock with the larger assembly it belongs to. To avoid having a million unorganized zip lock bags, I then place the assemblies into different milk crates that correspond with the portion of the bike they come from. It doesn't hurt to write down all the parts in each crate so that when you aren't scrambling to look for a part later.
This is an example of the zip lock bag with labeled part. *Also thank you forum member OneWheelDrive for shipping out this brake and master cylinder.
In terms of wiring, I would strongly recommend using a book of these for organizing wire:
I am not going to pretend like I will remember where all the wiring will go, so I have taken one numerical set on one connection of the wire, and the corresponding number with the other. Here is a picture example of how the stickers look on one side of the wiring:
This is the progress I have made on the bike so far, as of today:
Next week I will pull the engine and start the rebuilding process. I am deciding on a seat to do a mock up of the frame to determine if I need to cut it before sandblasing.