Solved the intermittent firing of cylinders #2 and #3.
I was waiting for a stock CB550F airbox to arrive after buying a complete set on Ebay.
The bike as I bought it had individual pod filters.
With the stock airbox on, it's running good on all 4 cylinders. And I my main jets are 100 not 105, my carb rebuild kits included a #90, a #100, and a #125 main jets.
I suspected that the stock airbox *could* fix my inconsistent cylinder firing problem -- because the way the bike was running, it reminded me of "lean lurch" when a cylinder is *barely* getting enough gas to fire every once in a while. Last time I had lean lurch was an under-jetted Kawasaki S3-400 triple; the way my cb550f was running, kinda reminded me of that, so I was hopeful returning the stock intake system would help, and it did. That's why I didn't go out and buy new points/condensers, I wanted to eliminate the chance it was just running lean.
The original main jets that came in the bike as I bought it were #100's. So I put the #100's that came with the carb rebuild kits in the carbs.
The plugs however show the engine is still running a bit lean.
If as I suspect the prior owner de-restricted the stock muffler (reason I suspect that: it's louder that normal for a fully stock cb550 exhaust) --
-- would the reduction in back pressure in the partly de-restricted muffler result in lean-looking plugs and the chrome header pipes blueing (ie. running too hot) ?