I will try to help you out with some explanations of the Honda bearing charts.
First off, you should only work in metric...why? well we have moved on its not the 60's anymore.
get your mind around it and you will find it is much easier to work in multiples of 10.
The Honda bearing charts, that you have shown. these are in Metric, not imperial.
The clearances specified are in Microns. 1.0mm = 1000 microns (the little symbol that looks like a U with a tail to it).
The Honda std measurements:
Main bearing Journal: (same for big end journal) Dia 32.0 + 0.0, - 0.010-0.030 (-10-30 microns) this is 31.99-31.97
Big end rod dia: 35.0 -0.0, + 0.008-0.024 (8-24 microns) depending on rod size 1,2 or 3
Main case inside dia: same as rod dia. case marked A B or C
So Crank mains and big ends should not be more than 32.0mm can go down to 31.97mm.
Rod ID should not be less than 35.0mm can go up to 35.024.
Main case ID, same as for Rod ID.
Std clearance: Mains = 20-50 microns.
Std clearance: big ends = 18-48 microns
So looking at your clearances:
Main journals: 0.002" = 51 microns......measure again with a micrometer.
Main journal #4 : 0.001" = 25 microns
Big end journals: 0.0015" = 38 microns
Big end journal #4: 0.003" = 76 microns...........measure again with a micrometer. may need a new rod and or crankshaft.
Your measurement of the crank journals of 32.0mm.......measure again with a micrometer, if you are under 31.97 crank will need to be replaced.
Phew. hope i have not made it sound too complicated. if i have made any mistakes or missed out something, let me know.
Kevin