I agree with Mike on the cam timing, you might advance it 1-2 degrees if you like, you may see a couple more HP down low as well as slightly better throttle response.
To address earlier questions. I would clean the ports up and retain the stock valves if possible. Couple of reasons, first as you said and I pointed out. You are wanting a street chopper on a budget. Secondly the stock valves provide better flow, the shape of the heads (this is why I asked you) out flow the flat aftermarket valve with all things being equal. I have done back to back tests to confirm this, typically the loss is about 2 cfm per port on the intake side. If you are not going over size on the valves (I would not on this given project), you are better off staying with the stock valves.
If I were helping you build this setup, I would simply recommend a 836 kit , 41 (cx-1) cam with a good port clean up, make sure the valves all seal up good and have fun riding.