I have run into an issue that I can't figure out after closing the cases and installing the shifter mechanism on a '72 CB750K. I'm hoping that someone with more experience with these transmissions can help me understand what would cause the following. When I go to try to shift through the gears, it only wants to do half shifts. It feels like the gears only mesh up in certain spots once I rotate the final drive shaft (front sprocket) by hand.
This is the sequence of the events happening: shift from 1st to 2nd -> half shift up -> shift back to 2nd -> spin final drive shaft a bit -> shift to 3rd -> shift down to 2nd -> now I can't shift back down to first. Sometimes I have to do this to shift up and down through each gear, sometimes I can shift a couple of gears before it will half shift again.
Another interesting part is if I try to shift from neutral to 1st it will sometimes half shift. It acts like it is still in neutral until I spin the final drive shaft a couple of rotations and I can actually feel the gear engage the clutch shaft (I dont know the technical term) and then I can actually shift it fully into 1st gear.
Half shift to 1st:

1st (sorry for blurry pic, you get the idea):

I tried loosening the neutral indicator thinking it might be to tight and pinning the shift drum but no change. Let me know your thoughts or if more information is needed from me.