The point about letting it idle is very important; don't let it stand around idling for several minutes without a fan circulating over it, shade or no shade.
The "ticking" could easily be an exhaust leak, a tappet is loose (valves needing adjustment) poor oil pressure, etc. The full 3,000 Mile Service is mandatory for a fresh start up after a long winter's slumber.
The "knocking" could easily be the carbs are out of synch. And adjusting them to "lean" them out is contributing to a hotter engine. Best to do the 3K service, and fully clean the tank and carbs, set everything to stock (if the airbox and exhaust are stock) and give it a really good tune up.