I don't like cutting away metal with a tap. The metal was bent to get where it is now. Bend it back.
Think small chisel and find one that fits in the undamaged grooves. Then use that to tap the threads back into line.
The other suggestion is to modify a tap so it rolls the metal back into place. Instead of cutting away using a sharp edge, make the entry side into a plow shape, so it will push the metal back to original position.
Sometimes you have to pay for your mistakes. It's part of the learning process, on occasion. If you are unsure, take it to a machinist. If he tells you what you want hear, pay him to save the part.
Cheers,