The guy that bought this bike had no clue what he was doing, much less what to look for. This list will be shorter than what I have found in reality because I am old and forget things.
Wiring: Hack job. Looks like an attempted minimal wiring job. Zero fuses, house wiring used, a single power line split into three feeds. All frame ground points covered in powder coat.
Never installed CCT bolt. However, he said he heard the engine run. That means the valve lash has to be done. Missing an engine bolt that mates the case halves together. Missing spacer for engine mounting.
End caps on swingarm not installed, zerk fitting not installed on swingarm, front brake caliper seized, gauge cluster cracked all to hell and covered in clear silicone to seal them, incorrect and mismatched chain adjusters and both had stripped threads so the bolts basically fell out, wrong rear axel, missing brake side spacer, stepped spacer not installed, bearings looked like they were beat on, missing bearing retainer, threads on the hub all sorts of goobered up, no wheel dampers, missing tach cable. The passenger peg brackets were hacked off. Unfortunately, they served as mounts for the exhaust, rear brake return spring, and rear brake adjustment/stop.