So, is your harness stock, or are you re wiring you bike from scratch? I have a Rick's regulator that came with my bike, and the PO had custom wired it without ANY fuses at ALL. I stripped everything, and installed a stock wiring harness which the Rick's regulator just plugged into... haven't had any problems, and never lost a minute of sleep over it. Works great. The white, black and green have spade terminals that plug into the stock harness, and that was where the regulator used to connect. The Red hot wire is output, and the other wires regulate the field coil to give you proper charging current. That is the purpose of the regulator. Hope I got all the colors right from memory, it's too early here to get the wiring diagram out lol.
Charlie