A combination of laziness and cheapness has meant that I haven't taken your suggestions of going to a dyno like a should. But, I have made a handful of changes and, for posterity I guess, here are those numbers. Reminder this bike is a CB550, 595cc 10.5:1 pistons, ported head, webcam 58a
July 2018
Main Jet 120 -> 115
Air Jet 250
Throttle Valve 2.5
Needle YY8
Clip position 4 -> 3
Slow jet 60
Valve seat 3.2
Starter jet 45
Air Screw ~1 -> ~1.25
The bike ran well, idle was fine i guess, WOT was very good, 1/3 throttle was bad.
August 2019
Main Jet 115
Air Jet 250
Throttle Valve 2.5
Needle YY8
Clip position 4 -> 2
Slow jet 60
Valve seat 3.2
Starter jet 45
Air Screw ~1.25
This change was terrible! Partial throttle barely worked at all.
August 2019 #2
Main Jet 115
Air Jet 250
Throttle Valve 2.5
Needle YY8
Clip position 2 -> 4
Slow jet 60
Valve seat 3.2
Starter jet 45
Air Screw ~1.25
The was MUCH better.
August 2019 #3
Main Jet 115
Air Jet 250
Throttle Valve 2.5
Needle YY8
Clip position 4 -> 5
Slow jet 60
Valve seat 3.2
Starter jet 45
Air Screw ~1.25
Not a huge change, probably not worth changing it again. Plus, this probably means its just on the rich side of correct, which I think is a good way to go.
September 2019
Main Jet 115->120
Air Jet 250
Throttle Valve 2.5
Needle YY8
Clip position 5
Slow jet 60
Valve seat 3.2
Starter jet 45
Air Screw ~1.25
This means they are close to the factory settings, the only difference is the airscrew is a bit lean and the clip position is 1 step richer. I did one pull, slowly rolling the throttle and it had nice acceleration the whole time. I did a second pull immediately after and that one was extremely fast. I'm sure this means something.