The stock CB500 carbs had a setup number stamped onto the carb body mount flange, top right. The setup number for the the CB550 with stock airfliter and exhaust system was 627B. These carbs had a #40 slow, #100 main, and , according the the shop manual, #2.5 needle. I never suspected the slides or cutaways were different beteen the CB500, CB550K, & CB550F that used the same style carb bodies with different setups; 627B, 022A and 069A respectively. So, I haven't compared the slides themselves beteen models for dimensional or number stamped differences. I'll make some notes next time I need to take them apart.
One technique for machine repair is to correct anything known to be out of spec. Do enough of this and the bike will generally run like new. Of course, this assumes a bike unmodified from book referenced specifications. If your carb sync is out, sometimes the plugs will show different deposit types. At any rate, you can compare the plugs to the pics on:
http://www.dansmc.com/Spark_Plugs/Spark_Plugs_catalog.htmlAlso, unbalanced carbs can show different head pipe temps, particularly at idle.
You also might consider marking your throttle with tape, temporarily, while you sort out the troubles. This is so you will know where 1/4, 1/3, 1/2, etc, throttle posistions are during tests. This will better help you focus on what part of the carb operation to address, pilot jet, air bleed, slide needle, or main jet.
Hope this helps,