MKNGT - A few basics for you to understand as you go forward:
Your engine does not create enough amps to recharge the battery until you surpass ~2,500 RPMs.
Your Lithium battery is now toast. Fully discharge it (as you've done) and it will recharge, but hold its charge going forward. Replace it with an AGM.
Fully charged, and resting, you should see about 13.2-13.8v depending upon battery type.
At idle with the engine running, your battery will slowly but surely drain. If you are riding around town, low RPMs, you are in a discharge mode. You must keep the RPMs up while riding. Stock idle speed is about 1,100. Reset your idle and fix your charging issue.
Your original issue may have been a bad battery to begin with. It may be due to an upgraded headlight bulb that is drawing too many watts (stock is 35/45 if I recall correctly). It could also be your method of riding (too low RPMs).
So start again with a new, fully charged battery. Let it rest 2 hours after charging, then measure the voltage at the terminals with the key OFF, and engine OFF. Post those. Turn on the key, and retake the measurements. Then run the motor, 2,500 RPMS, and 4,500 RPMS, and take the measurements. Post those results. That will tell you what is, and what isn't working enough to point you in the right direction.
Don't assume the stator is bad as they seldom ever do fail unless subjected to crash damage. More likely bad battery, bad ground connections, and corrosion in the harness are your issues. Or PO upgrades.