I'm currently restoring a cb400f and cb350f and while inspecting the inlet ports after removing the rubber carb connectors, I noticed that all of the sync port block off screws except cyl #2's were all pretty well matched to their ports. I'd say cyl #2's screw was protruding 1-2 mm, or, enough to catch/scratch the pad of my finger while feeling inside the port. It's the same on both engines, with #2 protruding about how much I expected them all to stick through in stock configuration from the reports and pictures across the forum.
I wouldn't think anything of this if it was only on my 400, which, from what I gather, was probably a track bike for a while and could have had a "matched" screw set, with one replaced in the heat of a moment, now showing in the #2 runner, but since it's EXACTLY the same on the 350f, I believe this is likely how they came stock. Variation in port geometry/wall thickness/un-symmetric casting?
This is kind of inconsequential, especially on a stock engine, but it sticks into the airflow enough that I think grinding this screw down so that it matches the others might actually make a difference in evening power production across the cylinders. I figured they'd all be long or they'd all be short/matched, one way or the other, not both. If it makes a difference anywhere, it'd be on the smallest ports/engine of the series.
I definitely want them to be the same, since I'm there. It might be inherent and unique to the small-four motor (these two are my first experience with the small sohc platform), but I thought it might be worth calling to the attention of a group that COULD verify/refute/tell me it doesn't matter anyway.
To attempt to answer my own question, I plan to take both bikes to a local shop that has a dyno and egt each head pipe (both running 400f pipes) to ensure my a/f mixtures are even across all cylinders once I get both bikes put together. This type of instrumented testing (individual cyl. meas. devices) would be the level I think would be required to measure any difference from a mod like this...and it still might be lost in noise...and it's not the primary purpose (really, it's just to tell me if I cleaned all four carbs the same and what direction it needs to go, if any), but as a side-benefit, it'll provide insight to this question.