If I can ask a question or two:
What carb kits were used? If they were Keyster and you installed their jets and needles, it is running too lean in the midrange RPM (and higher) from those parts. Their needles are too thick, and their jets are non-Keihin type, which run about 10% leaner than the number stamped on them.
Are you using the stock airbox? If so, do you have the long vent tube for the carb bowls routed up behind it, or up under the seat, to ensure good float-bowl air pressure when running at speed?