I have run HA style breadboxes on a couple different cb750f's. I wouldn't worry about blocking off the sides. I have not experienced any problems with crosswinds affecting performance.
A couple more tips...fit the stock air box boots to your breadbox and you will have an easy time tuning...as these are velocity stacks designed specifically for the flow needs of your engine. Also, I use UNI foam filter material that comes in a sheet and cut it to fit the breadbox.
Also, be aware that these breadboxes were available in at least a few different overall sizes...use the biggest volume one you can find and fits for best performance.